In this revised version of the manuscript the authors present a better explanation of their algoirthm and make a more thorough evaluation of their approach by including one real data set, and a larger simulated data set. On all data sets tested AGOUTI performs better than its competitor. I am still not convinced from the data presented here that AGOUTI will improve the assembly after a good DNA scaffolder was applied, but I have no doubt that some users will find it useful for their genome assembly tasks.
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